identify pulmonary nodules and other suspicious lesions in CT scans

  • Swimlane: 2020-2021
  • Column: DONE
  • Position: 17
  • Assignee: Olivier Debeir
  • Creator: Olivier Debeir
  • Started: 01/10/2020 00:00
  • Created: 30/09/2020 08:03
  • Modified: 06/07/2021 13:55
  • Moved: 06/07/2021 13:55
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Olivier Debeir
Olivier Debeir Created at: 12/10/2020 13:04 Updated at: 12/10/2020 13:04

LNDB challenge

  • train/validation 294 CT scan 6*4 Gb
  • test

supervision: ?

fleischner score pour classer les nodules

ref: 1 doc sur la classif des nodules

Olivier Debeir
Olivier Debeir Created at: 20/10/2020 13:14 Updated at: 20/10/2020 13:14
  • segmentation pulmonary nodule
    iwnet volume + centroide
    3D unet

--> IWNET

Olivier Debeir
Olivier Debeir Created at: 04/12/2020 07:42 Updated at: 04/12/2020 07:42

Dear Professor,

I won't be able to attend today's session so I'm sending an e-mail instead:
I am working on the LNDb challenge for nodules segmentation, and I am testing a network I found in a scientific paper, the iW-Net (https://github.com/gmaresta/iW-Net)
However, I have an issue while trying to download the required packages in the requirement.txt file with pip install. I also tried to do it directly on google colab, but still the downloading is never completed as it doesnt find some packages, I tried after installing the conda environement and executing
!while read requirement; do conda install --yes $requirement; done < requirements.txt
but he still doesn't find all the packages. In the requirements.txt a specific version is required for each package and there is no specification on which channel I should use in the git repository that would respect all those requirements.

I have been working on this issue for a few weeks now, and I found no aswer that works

Thank you in advance for your help,

Ghita Ait Ouhmane

Olivier Debeir
Olivier Debeir Created at: 24/02/2021 14:01 Updated at: 24/02/2021 14:01

problèmes techniques load/save HDF5
le fichier de poids ne correspond pas à la structure du réseau

peut-être repartir vers un entrainement sans récupérer les poids

Olivier Debeir
Olivier Debeir Created at: 10/03/2021 13:15 Updated at: 10/03/2021 13:15
  • se limiter à des images 2D
  • se concentrer sur les 170 volumes annotés